A call for phylogenetic context to understand geographic variation and host specificity in the parasitic copepod genus.

Abstract

Freshwater parasitic copepods appear to exhibit great taxonomic diversity. However, little is known about gene flow between species or whether there is incongruence between morphological and phylogenetic species definitions. Additionally, little is known about what evolutionary factors may contribute to speciation across various lineages. The copepod genus, which includes common ectoparasites of fishes in the family Salmonidae, is distributed throughout the northern hemisphere and is a good model to demonstrate limited taxonomic understanding. Much of the regular scholarly output regardingcopepods comes from fisheries management agencies, where they are considered a pest species. Within a geographic region,copepods of the same species are often found infecting their hosts at substantially different rates across different water bodies. However, present taxonomic definitions ofare based on decades old morphological descriptions, which were limited in geographic scope and number of specimens examined. There is a strong possibility that traditional species definitions in this genus, based on host species along with morphology, are missing cryptic diversity that may explain differences in infection intensity across environments. This review outlines the current scientific limitations of understanding of this genus and provides suggestions for how adding genetic data could inform taxonomic revisions, as well as clarifying connections between genetic differentiation and infection dynamics across localities.