Molecular characterization of thegene ofand the proposition of a new genotyping method as alternative for classical serotyping.

Abstract

is the aetiological agent of infectious coryza (IC) in chickens and characterized by acute respiratory distress and severe drop in egg production. Vaccination is important in the control of IC outbreaks and the efficacy of vaccination is dependent onserovars included in the vaccine. Classical serotyping ofis laborious and hampered by poor availability of antigens and antisera. The haemagglutinin, important in classical serotyping, is encoded by thegene.gene analysis has been shown to have potential as alternative to classical serotyping. The aim of the present study was to further investigate the potential of sequence analyses of partial region 1 of thegene, thehypervariable region and the concatenated sequences of both fragments. For this analysis, 123gene sequences (field isolates,serovar reference strains and vaccine strains) were included. Evaluation of serovar references and vaccine strains revealed a need for critical evaluation, especially within Page serovar B and C. Phylogenetic analysis ofregion 1 resulted in a separation of Page serovar A, B and C strains. Analysis of theHVR alone was not sufficient to discriminate all nine different Kume serovar references. The concatenated sequences ofregion 1 andHVR resulted in 14 clusters with a high correlation with Page serovar and with the nine currently known Kume serovars and is therefore proposed as a novel genotyping method that could be used as an alternative for classical serotyping of.